Commit 1d76e09b authored by Loup's avatar Loup
Browse files

update vignettes with new economic names

parent f0f0e51f
......@@ -181,7 +181,7 @@ cultivars_new <- data.frame(cultivarName = c("Susceptible", "Resistant"),
yield_L = c(0.0, 0.0),
yield_I = c(0.0, 0.0),
yield_R = c(0.0, 0.0),
production_cost = c(225, 300),
planting_cost = c(225, 300),
market_value = c(200, 150),
stringsAsFactors = FALSE)
cultivars_new
......@@ -267,7 +267,7 @@ With this example of parameterisation:
- "Resistant3" is a nonhost cultivar
- "Forest" is not a crop.
Infection is impossible on both "Resistance3" and "Forest", but the former will
be considered for host growth, yield, production costs and benefits, whereas the latter won't.
be considered for host growth, yield and planting costs, whereas the latter won't.
### Allocating cultivars to croptypes
......@@ -360,15 +360,16 @@ text files (`writeTXT=TRUE`), graphics (`graphic=TRUE`) and a video (`videoMP4=T
See `?epid_output` and `?evol_output` for details on the different output variables.
>Possible epidemiological outputs include:
- **"audpc"** : Area Under Disease Progress Curve (average proportion of diseased hosts relative
to the carryng capacity)
- **"gla_abs"** : Absolute Green Leaf Area (average number of healthy hosts per square meter)
- **"audpc"** : Area Under Disease Progress Curve (average number of diseased hosts per square meter)
- **"audpc_rel"** : Relative Area Under Disease Progress Curve (average proportion of diseased hosts
relative to the total number of existing hosts)
- **"gla"** : Green Leaf Area (average number of healthy hosts per square meter)
- **"gla_rel"** : Relative Green Leaf Area (average proportion of healthy hosts relative to the
total number of existing hosts)
- **"eco_product"** : total crop production (in weight or volume units per ha)
- **"eco_cost"** : total crop costs (in monetary units per ha)
- **"eco_benefit"** : total crop benefits (in monetary units per ha)
- **"eco_grossmargin"** : Gross Margin (benefits - costs, in monetary units per ha)
- **"eco_yield"** : total crop yield (in weight or volume units per ha)
- **"eco_cost"** : operational crop costs (in monetary units per ha)
- **"eco_product"** : total crop products (in monetary units per ha)
- **"eco_margin"** : Margin (products - operational costs, in monetary units per ha)
- **"HLIR_dynamics", "H_dynamics", "L_dynamics", "IR_dynamics", "HLI_dynamics"**, etc.: Epidemic dynamics
related to the specified sanitary status (H, L, I or R and all their combinations). Graphics only,
works only if graphic=TRUE.
......
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