.gitlab-ci.yml

stages: 
  - build_test
  - packages
  - build_img
  - deploy

r-build_test:
  stage: build_test
  tags:
    - "r-base-biosp"
  script:
    - "Rscript -e \"pkgbuild::compile_dll()\""
    - "Rscript -e \"roxygen2::roxygenize('.', roclets=c('rd', 'collate', 'namespace'))\""
    - "R CMD build . --resave-data --compact-vignettes=both"
    - "R CMD check --as-cran $(ls -rt landsepi_* |tail -1)"
  artifacts:
    paths:
      - "$(ls -rt landsepi_*.tar.gz |tail -1)"

r-devel-build_test:
  stage: build_test
  tags:
    - "r-devel-biosp"  
  script:
    - "Rscript -e \"pkgbuild::compile_dll()\""
    - "Rscript -e \"roxygen2::roxygenize('.', roclets=c('rd', 'collate', 'namespace'))\""
    - "R CMD build . --resave-data --compact-vignettes=both"
    - "R CMD check --as-cran $(ls -rt landsepi_* |tail -1)"
  artifacts:
    paths:
      - "$(ls -rt landsepi_*.tar.gz |tail -1)"
  allow_failure: true

r-Mac-build_test:
  stage: build_test
  tags:
    - "MacOS"  
    - "R4.1"
    - "vmr"
  script:
    - Rscript -e "install.packages(c('roxygen2', 'rmarkdown', 'Rcpp','sp','Matrix', 'mvtnorm','maptools','fields','splancs','sf','DBI','RSQLite', 'foreach','parallel','doParallel', 'shiny', 'shinyjs', 'DT'), repos='https://cloud.r-project.org', type='mac.binary')"
    - 'TMPDIR="/tmp" && Rscript -e "pkgbuild::compile_dll()"'
    - "Rscript -e \"roxygen2::roxygenize('.', roclets=c('rd', 'collate', 'namespace'))\""
    - "R CMD build . --resave-data --compact-vignettes=both"
    - "R CMD check --as-cran $(ls -rt landsepi_* |tail -1)"
  artifacts:
    paths:
      - "$(ls -rt landsepi_*.tar.gz |tail -1)"

r-windows-build_test:
  stage: build_test
  tags:
    - "win10"
    - "R4.1"
    - "vmr"
  before_script:
    - pacman --noconfirm -yS mingw-w64-{i686,x86_64}-gsl
    - Rscript -e "install.packages(c('roxygen2', 'rmarkdown', 'Rcpp','sp','Matrix', 'mvtnorm','maptools','fields','splancs','sf','DBI','RSQLite', 'foreach','parallel','doParallel', 'shiny', 'shinyjs', 'DT'), repos='https://cloud.r-project.org')"
  script:
    - "Rscript -e \"pkgbuild::compile_dll()\""
    - "Rscript -e \"roxygen2::roxygenize('.', roclets=c('rd', 'collate', 'namespace'))\""
    - "R CMD build . --resave-data --compact-vignettes=both"
    - "R CMD check --as-cran $(ls -rt landsepi_* |tail -1)"
  artifacts:
    paths:
      - "$(ls -rt landsepi_*.tar.gz |tail -1)"

release-r:
  stage: packages
  tags:
    - "r-base-biosp"
  script:
    - "echo \"Nothing to do\""
  artifacts:
    paths:
      - "$(ls -rt landsepi_* |tail -1)"
  rules:
    - if: $CI_COMMIT_TAG != null
  dependencies:
    - r-build_test

release-win:
  stage: packages
  tags:
    - "win10"
    - "R"
    - "binaries"
  script:
    - "R CMD INSTALL --build --force-biarch $(ls -rt landsepi_*.tar.gz |tail -1)"
  artifacts:
    paths:
      - "$(ls -rt landsepi_*.zip |tail -1)"
  rules:
    - if: $CI_COMMIT_TAG != null
  dependencies:
    - r-windows-build_test

release-winR4:
  stage: packages
  tags:
    - "win10"
    - "R4.1"
    - "vmr"
  before_script:
    - pacman --noconfirm -yS mingw-w64-{i686,x86_64}-gsl
    - Rscript -e "install.packages(c('roxygen2', 'rmarkdown', 'Rcpp','sp','Matrix', 'mvtnorm','maptools','fields','splancs','sf','DBI','RSQLite', 'foreach','parallel','doParallel', 'shiny', 'shinyjs', 'DT'), repos='https://cloud.r-project.org')"
  script:
    - "R CMD INSTALL --build --force-biarch $(ls -rt landsepi_*.tar.gz |tail -1)"
  artifacts:
    paths:
      - "$(ls -rt landsepi_*.zip |tail -1)"
  rules:
    - if: $CI_COMMIT_TAG != null
  dependencies:
    - r-windows-build_test

release-Mac:
  stage: packages
  tags:
    - "MacOS"  
    - "R4.1"
    - "vmr"
  script:
    - Rscript -e "install.packages(c('roxygen2', 'rmarkdown', 'Rcpp','sp','Matrix', 'mvtnorm','maptools','fields','splancs','sf','DBI','RSQLite', 'foreach','parallel','doParallel', 'shiny', 'shinyjs', 'DT'), repos='https://cloud.r-project.org', type='mac.binary')"
    - "R CMD INSTALL --build $(ls -rt landsepi_*.tar.gz |tail -1)"
  artifacts:
    paths:
      - "$(ls -rt landsepi_*.tgz | tail -1)"
  rules:
    - if: $CI_COMMIT_TAG != null
  dependencies:
    - r-Mac-build_test

buildDocker:
  tags:
    - "dind"
    - "docker"
  variables:
    DOCKER_TLS_CERTDIR: ""
    DOCKER_HOST: tcp://docker:2375/
    DOCKER_DRIVER: overlay2
  services:
    - docker:19.03.0-dind
  before_script:
    - docker login -u $CI_REGISTRY_USER -p $CI_REGISTRY_PASSWORD $CI_REGISTRY
  stage: build_img
  script:
    - docker pull $CI_REGISTRY_IMAGE:latest || true
    - docker build --cache-from $CI_REGISTRY_IMAGE:latest --tag $CI_REGISTRY_IMAGE:$CI_COMMIT_SHA --tag $CI_REGISTRY_IMAGE:latest -f inst/shiny-landsepi/Dockerfile .
    - docker push $CI_REGISTRY_IMAGE:$CI_COMMIT_SHA
    - docker push $CI_REGISTRY_IMAGE:latest
  after_script:
    - docker logout $CI_REGISTRY
  rules:
    - if: '$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH'

deploy:
  image: debian
  stage: deploy
  environment:
    name: shinyproxy
    url: https://shiny.biosp.inrae.fr/
  rules:
    - if: '$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH'
  before_script:
    - apt-get update && apt-get install -y sshpass openssh-client
    - export SSHPASS=$DEPLOY_PWD
  script:
    - sshpass -e ssh -o StrictHostKeyChecking=no $DEPLOY_USER@$DEPLOY_IP "./launch.sh $CI_REGISTRY_USER $CI_REGISTRY_PASSWORD $CI_REGISTRY_IMAGE latest"

pages:
  stage: deploy
  image: rocker/tidyverse:4.0.1
  before_script:
    - apt-get update
    - apt-get install -y --no-install-recommends libgsl-dev libudunits2-dev libproj-dev libgdal-dev libharfbuzz-dev libfribidi-dev 
  script:
    - Rscript -e 'install.packages(c("devtools", "pkgdown"), repos="cloud.r-project.org")'
    - Rscript -e 'devtools::install()'
    - Rscript -e 'pkgdown::build_site(override = list(destination = "public"))'
    - mkdir -p public/inst/
    - cp -r inst/logos public/inst/
    - cp vignettes/listofparameters.pdf public/articles/
    - cp vignettes/landsepiposter.pdf public/articles/
  artifacts:
    paths:
      - public
  rules:
    - if: '$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH'
      when: always